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Joint CMU-Pitt Ph.D. Program in Computational Biology
Robert F. Murphy and Ivet Bahar, Directors
Seminar Series
Fridays at 11am.
Seminars hosted by Carnegie Mellon are in the Mellon Institute conference room
Seminars hosted by Pitt are in BST3 room 6014
| Date/Location | Speaker | Affiliation | homepage | Title of Talk | Host |
| Aug. 31, 2007 @ BST3 | Nir Friedman | Hebrew University | homepage | Natural history and evolutionary principles of gene duplication in fungi | Naftali Kaminski |
| Sep. 7, 2007 @ MI | Shlomo Ta'asan | Carnegie Mellon University | homepage | Mathematical modeling approaches for systems biology | |
| Sep. 17, 2007 @ MI | Pratul K. Agarwal | Oak Ridge National Laboratory | homepage | Enzymes: an integrated view of structure, dynamics and function | Maria Kurnikova |
| Sep. 21, 2007 @ BST3 | James Faeder | University of Pittsburgh | Rule-based modeling of signal-transduction systems | ||
| Sep. 28, 2007 @ BST3 | Adrian Elcock | University of Iowa | homepage | Molecular simulations of bacterial cytoplasm | Lillian Chong |
| Oct. 5, 2007 @ MI | Dmitri Chklovskii | HHMI - Janelia Farms | homepage | High-throughput reconstruction of brain circuits: How machine vision will revolutionize neuroscience | Justin Crowley |
| Oct. 12, 2007 @ MI | Ming Li | University of Waterloo | homepage | Modern homology search | Chris Langmead |
| Oct. 19, 2007 @ MI | Bud Mishra | New York University | homepage | SMASH: Single Molecule Approach to Sequencing by Hybridization | Chris Langmead |
| Oct. 26, 2007 @ MI | Uwe Ohler | Duke University | homepage | Motifs and patterns: Using sequence and image data to understand gene regulation in eukaryotes | Eric Xing |
| Nov. 2, 2007 @ MI | Olga Troyanskaya | Princeton University | homepage | Combining genomic data, computation, and experiments to discover novel biology | Eric Xing |
| Nov. 9, 2007 @ MI | Jeffrey Skolnick | Georgia Institute of Technology | homepage | Prediction of protein structure and function on a proteomic scale | Chris Langmead |
| Nov. 16, 2007 @ BST3 | Gary An | Northwestern University | homepage | Dynamic Knowledge Representation using Agent Based Modeling: A Multi-scale Modeling Architecture for Acute Inflammation | Yoram Vodovotz |
| Nov. 30, 2007 @ MI | Tom Mitchell | Carnegie Mellon University | homepage | Brains, Meaning and Corpus Statistics | |
| Dec. 7, 2007 | Gregory Voth | University of Utah | homepage | The Multiscale Challenge for Biomolecular Systems: A Systematic Approach | Hagai Meirovitch |
| Jan. 18, 2008 @ MI | Nancy Zhang | Stanford University | homepage | A multisample change-point model for DNA copy number analysis | Eric Xing |
| Jan. 25, 2008 @ MI | Olga Troyanskaya | Princeton University | homepage | Combining genomic data, computation, and experiments to discover novel biology | Eric Xing |
| Feb. 1, 2008 @ Mauldin Auditorium (NSH 1305) | Ivet Bahar | University of Pittsburgh | homepage | Supramolecular Machinery: Insights from Elastic Network Models | |
| Feb. 8, 2008 @ BST3 | Harmen Bussemaker | Columbia University | homepage | Data-driven biophysical modeling of (post-)transcriptional networks | James Faeder |
| Feb. 15, 2008 @ BST3 | Bruce Tidor | Massachusets Inst. of Technology | homepage | Electrostatics in ligand binding and design | Carlos Camacho |
| Feb. 22, 2008 @ BST3 | Takis Benos | University of Pittsburgh | homepage | What can evolution say about gene regulation? From DNA signals to gene networks | |
| Feb. 29, 2008 @ BST3 | Thomas E. Cheatham, III | University of Utah | homepage | Promise and peril in the simulation of nucleic acids and protein structure, dynamics and interactions | Carlos Camacho |
| Mar. 7, 2008 @ MI | Sridhar Hannenhalli | University of Pennsylvania | homepage | Computational analysis of eukaryotic transcriptional regulation and its evolution | Russell Schwartz |
| Mar. 21, 2008 @ MI | Mark Gerstein | Yale University | homepage | Human Genome Annotation | Eric Xing |
| Mar. 28, 2008 @ BST3 | Marcelo Magnasco | Rockefeller University | homepage | Sparse time-frequency representations and the neural coding of sound. | Bino John |
| Apr. 4, 2008 @ BST3 | Marti Head | GlaxoSmithKline | Structure-Based Design at GSK | Lillian Chong | |
| May 13, 2008 @ MI | Trey Ideker | University of California, San Diego | homepage | Mapping gene regulatory pathways by assembly of physical and genetic interactions | Ziv Bar-Joseph |
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