Molecular biophysics: theory and simulations of structure and dynamics; supramolecular machinery; allosteric effects and mechanisms of action; sequence-structure-dynamics-function relations; statistical mechanics of macromolecules; multiscale network models for equilibrium systems; modeling enzyme-substrate, protein-DNA and protein-drug interactions and biomolecular complexes and assemblies; drug screening and docking

"Signal propagation in proteins and relation to equilibrium fluctuations." Chennubhotla C, Bahar I. PLoS Comput Biol. 2007 Sep 21;3(9):1716-26.

"Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation." Chennubhotla C, Bahar I., Tobi D. (2007) Curr Opin Struct Biol. 17:633-40.

Recent developments have enhanced the applicability of normal mode analysis (NMA) to macromolecular assemblies, solid states, and non-linear spectroscopes. Normal Mode Analysis provides comprehensive coverage of molecular structure

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Book Review in Briefings in Bioinformatics